MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Providencia alcalifaciens
WMus003.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
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Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 66
bases: 3,919,227 bps
CDS: 3,576
rRNA: 12
Repeat region:
tmRNA: 1
tRNA: 80
misc RNA:
Total features: 3,669
Total number of protein coding genes annotated/found:
3,576
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Items 1 - 20
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Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range
Gene Product Name
SEQF5002|JADGLZ010000001.1
SEQF5002_01421
Genome Viewer
NA
AA
504/168
757524-758027
Inner membrane protein YlaC
SEQF5002|JADGLZ010000001.1
SEQF5002_01420
Genome Viewer
NA
AA
213/71
757043-756831
Cold shock-like protein CspC
SEQF5002|JADGLZ010000001.1
SEQF5002_01419
Genome Viewer
NA
AA
699/233
756344-755646
Protein MgtC
SEQF5002|JADGLZ010000001.1
SEQF5002_01418
Genome Viewer
NA
AA
2703/901
755500-752798
Magnesium-transporting ATPase%2C P-type 1
SEQF5002|JADGLZ010000001.1
SEQF5002_01417
Genome Viewer
NA
AA
759/253
751928-752686
hypothetical protein
SEQF5002|JADGLZ010000001.1
SEQF5002_01416
Genome Viewer
NA
AA
312/104
751469-751780
hypothetical protein
SEQF5002|JADGLZ010000001.1
SEQF5002_01415
Genome Viewer
NA
AA
513/171
750459-749947
Regulator of sigma S factor FliZ
SEQF5002|JADGLZ010000001.1
SEQF5002_01414
Genome Viewer
NA
AA
3984/1328
745599-749582
Bifunctional protein PutA
SEQF5002|JADGLZ010000001.1
SEQF5002_01413
Genome Viewer
NA
AA
1485/495
745105-743621
Sodium/proline symporter
SEQF5002|JADGLZ010000001.1
SEQF5002_01412
Genome Viewer
NA
AA
1401/467
742123-743523
D-serine/D-alanine/glycine transporter
SEQF5002|JADGLZ010000001.1
SEQF5002_01410
Genome Viewer
NA
AA
432/144
741256-741687
Antitoxin HicB
SEQF5002|JADGLZ010000001.1
SEQF5002_01409
Genome Viewer
NA
AA
351/117
739629-739279
Flagellar transcriptional regulator FlhD
SEQF5002|JADGLZ010000001.1
SEQF5002_01408
Genome Viewer
NA
AA
591/197
739282-738692
Flagellar transcriptional regulator FlhC
SEQF5002|JADGLZ010000001.1
SEQF5002_01407
Genome Viewer
NA
AA
954/318
738661-737708
Motility protein A
SEQF5002|JADGLZ010000001.1
SEQF5002_01406
Genome Viewer
NA
AA
939/313
737701-736763
Motility protein B
SEQF5002|JADGLZ010000001.1
SEQF5002_01405
Genome Viewer
NA
AA
2184/728
736672-734489
Chemotaxis protein CheA
SEQF5002|JADGLZ010000001.1
SEQF5002_01404
Genome Viewer
NA
AA
498/166
734472-733975
Chemotaxis protein CheW
SEQF5002|JADGLZ010000001.1
SEQF5002_01403
Genome Viewer
NA
AA
1602/534
733779-732178
Methyl-accepting chemotaxis protein I
SEQF5002|JADGLZ010000001.1
SEQF5002_01402
Genome Viewer
NA
AA
1566/522
732066-730501
Methyl-accepting chemotaxis protein IV
SEQF5002|JADGLZ010000001.1
SEQF5002_01401
Genome Viewer
NA
AA
840/280
730389-729550
Chemotaxis protein methyltransferase
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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